3-SMART
Pipeline for 3'-seq analysis
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Institut Curie Bioinformatics Core Facility
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5C-Pro
Pipeline for single-end 5C processing
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annotationMaker
Build indexes and annotation files for Nextflow pipelines
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as-mapping
Nextflow pipeline for Allele-specific analysis
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ATAC-seq
Nextflow pipeline for ATAC-seq data analysis
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biogitflow
Development worklow protocols for bioinformatics pipelines with git and gitlab
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ChIP-seq
Nextflow pipeline for ChIP-seq data quality controls and analysis
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geniac
Automatic Configuration GENerator and Installer for nextflow pipeline. This is a set of utilities to implement the best practises for the development of bioinformatics analysis pipelines with nextflow
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geniac-demo
This is a demo pipeline with the best practises for the development of bioinformatics analysis pipelines with nextflow and geniac (Automatic Configuration GENerator and Installer for nextflow pipeline).
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geniac-demo-dsl2
This is a demo pipeline with the best practises for the development of bioinformatics analysis pipelines with nextflow DSL2 and geniac (Automatic Configuration GENerator and Installer for nextflow pipeline).
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geniac-template
This is a template to pipeline with the best practises for the development of bioinformatics analysis pipelines with nextflow and geniac (Automatic Configuration GENerator and Installer for nextflow pipeline).
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HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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raw-qc
Nextflow pipeline for quality controls and trimming of raw sequencing data
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RNA-seq
Nextflow RNA-seq pipeline for quality controls and gene expression
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